PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_150520_ksif.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27512.2 Da    PI: 8.7819
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_150520_ksif.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.75e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s
  Bv6_150520_ksif.t1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCS 59
                        79***********************************************96 PP

2K-box97.71.8e-32851731098
               K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ea + s+qqe+ kLk++ e Lqr++R+l+GedL++Ls keL++Le+qL+ slk+iRs++++++++q+ +lq+ke++l+e+n++L+++l
  Bv6_150520_ksif.t1  85 REALELSSQQEYLKLKARHEALQRTHRNLMGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMVDQLTDLQRKEHMLNEANRTLKQRL 173
                         45556689******************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.814161IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-33275IPR002100Transcription factor, MADS-box
CDDcd002651.12E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-32323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.08789180IPR002487Transcription factor, K-box
PfamPF014863.2E-2691173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFCSS  60
PSMLKTLERY QKSNYGAPDN TVSTREALEL SSQQEYLKLK ARHEALQRTH RNLMGEDLGP  120
LSSKELESLE RQLDMSLKQI RSTRTQYMVD QLTDLQRKEH MLNEANRTLK QRLIEANQAS  180
SLQWNVHDIG YDRQPAQPHD DSFFHPLDCE PTLQMGYQND AVNAAAGGSV NNFMPNWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-44751761104Developmental protein SEPALLATA 3
4ox0_B8e-44751761104Developmental protein SEPALLATA 3
4ox0_C8e-44751761104Developmental protein SEPALLATA 3
4ox0_D8e-44751761104Developmental protein SEPALLATA 3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682729.10.0PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ034891e-142AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A0J8C5B10.0A0A0J8C5B1_BETVU; Uncharacterized protein
STRINGSolyc05g015750.2.11e-139(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-112MIKC_MADS family protein